PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030061-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8457.96 Da    PI: 10.7802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030061-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.6e-192659538
                        SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
              SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                        ++s++qvtfskRr+g++KKA EL+vLC+aeva++
  WALNUT_00030061-RA 26 EESKKQVTFSKRRAGLFKKAGELCVLCGAEVAML 59
                        5789***************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.821459IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-181459IPR002100Transcription factor, MADS-box
SMARTSM004328.6E-141470IPR002100Transcription factor, MADS-box
CDDcd001206.39E-181557No hitNo description
PRINTSPR004042.9E-101636IPR002100Transcription factor, MADS-box
PfamPF003192.0E-172659IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-103651IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MVIQKKMSEG KKTRGRQRIE IMELAEESKK QVTFSKRRAG LFKKAGELCV LCGAEVAMLG  60
TLKWREENTN WRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459820.17e-19MADS-box transcription factor family protein
RefseqXP_013459823.18e-19MADS-box transcription factor family protein
RefseqXP_013469972.14e-19MADS-box transcription factor family protein
SwissprotQ9FKK24e-18AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A072W1464e-19A0A072W146_MEDTR; MADS-box transcription factor family protein
TrEMBLA0A072UWU18e-19A0A072UWU1_MEDTR; MADS-box transcription factor family protein
TrEMBLA0A072UVN68e-19A0A072UVN6_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA20G27341.13e-17(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-19AGAMOUS-like 62